A self-proclaimed group called the Godzilla Prediction Network (GPN) is actively tracking Godzilla as he makes landfall. Besides trying to study the monster, part of their goal is trying to create patterns to minimize damage. The government, through the Crisis Control Intelligence (CCI) agency, is attempting a more active role through the development of weapons such as the Full Metal Missile Launchers. Matters become complicated, though, as CCI is also examining a giant meteor that is discovered in the Ibaragi Prefecture. The mysterious rock mass begins to levitate on its own and eventually pursues Godzilla. Confronting the King of the Monsters, who blasts apart the rock revealing an alien ship beneath, a new alien species is uncovered. The extraterrestrials then begin seeking intelligence and something from within Godzilla...